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Rearranged doxygen groups so that stuff that just deals with slv_system_t is in a module called 'system'.
Huge reorganisation -- all mtx and lin files moved to base/generic/linear. Required many #include statements to be changed.
Added (failing) test case for do_sensitivity_all.
Added scons switch IDA_NEW_ANALYSE for the new code that implements a better DAE analysis procedure. Minor tidying in list.[ch] Removed some DIEDIEDIE stuff from analyze.c. Added 'odeid' to the 'varip' structure in same. Collapsed a bunch of repetitive stuff with those fancy #defines I like so much. Flipped some return codes from functions integrator.c to return 0 on success. Added #include for sensitivity.h in lsode.c. Catch exceptions from sim.build() in do_integrate() in PyGTK GUI. Attempted to fix tcl/tk for errors from integrator_analyse as well (not tested).
Fixed some ASC_PANIC calls in atomvalue.c Removed some <!-- --> comments from list.h Added flagging of 'deriv' vars in analyse.c (no new lists are added though) Created separate doxygen module 'Analyse' (only affect C comments) Fixed return codes in slv9a.c, as well as some FPRINTFs. Cleaned up some documentation in slv_client.h. Removed var_diff, var_set_diff flag stuff. Added docstring for Integrator_getEngines in python wrapper.
Adding doxygen 'addtogroup' for Solver, Compiler, Integrator.
Changed ASC_DLLSPEC(TYPE) to ASC_DLLSPEC TYPE, because it was causing havoc with doxygen and ctags.
Added VAR_DIFF and VAR_DERIV flags to var_variable type. Added flagging of variables as such during integrator_analyse_dae. Cleaned out some old guff from the mtx* headers.
Implemented ATOLVECT, ATOL, RTOL parameters for the IDA integrator.
first attempt at merging with Ben's changes on the trunk
Added general-purpose text-information dialog to PyGTK interface. Added reporting of clique of a variable to PyGTK GUI. Changed 'fixable' and 'new bounds' to use the new dialog. Removed 'set<...>' from ascpy.i (it wasn't working), changed to vector<...>. Exported a couple of var incidences fns to the DLL/SO.
Merged changes from DAE branch (revisions 702 to 819) back into trunk. This adds the Integration API to the ASCEND solver (in base/generic). Also provides pre-alpha support for 'IDA' from the SUNDIALS suite, a DAE solver. Many other minor code clean-ups, including adoption of new 'ASC_NEW' and friends (to replace 'ascmalloc') Added some very sketchy stuff providing 'DIFF(...)' syntax, although it is anticipated that this will be removed.
Fixed all the missing symbols so that ASCEND Tcl/Tk interface builds with separate 'ascendtcl.dll'. Split Driver.c across Driver.c and new main.c, which has no Tcl/Tk references.
Getting the modular version the Tcl/Tk GUI working. In progress.
Moved 'extern "C"' into the ASC_DLLSPEC macro. Renamed .no.yacc and .no.flex files to have .c extension, so that SCons can tell what they are. Working on getting things building on VC++, still some problems (maybe just issues with $PATH tho)./
Huge cleanup of file header comments (GPL notice etc). Changed from ASC_DLLSPEC to ASC_DLLSPEC(TYPE) -- like python Fixed up some badly export symbols (missing 'extern') Fixed exporting of symbols from error.h Removed ASC_DLLSPEC from .c files-- only in .h files now (hope that's right...) Changed the way bintoken does its exporting, to take advantage of ASC_BUILDING_LIBASCEND (needs testing) I wonder if the 'extern' keywork should be a part of the ASC_DLLSPEC macro?
Adding ASC_DLLSPEC to all functions that are being used by Python interface. Also cleaned up some #ifdef header brackets and html-style comments inside doxygen comments. Renamed pygtk/interface/config.in to pygtk/interface/config.h.in and made this active again (for ASC_BUILDING_INTERFACE) use. Trying to catch error in ascpy.Library call with try/except, doesn't work though.
got rid of errant executable bits.
Documentation changes
Moved some incidence matrix routines to generic/solver from tcltk98. Documentation changes. Added (inactive) incidence matrix menu item to PyGTK interface Fixed autotools make for above changed (need to fix for Jam as well)
Standardised the "if seen" #defines to [ASC|ASCTK|ASCPY|ASCXX]_FILENAME_H Fixed compile on FC3
Updates to jam build: - moved FORTRAN library references to Jamrules_general - reworked internal referencing; now via Jamrules_general - FORTRAN support libs now built & referenced properly - initial build of prototype test suite Other minor source updates: - removed references to base.h from header file comments - exempted Mingw from __WIN32__ #define of LSODE in Lsode.c
Manual rework of doxygen comments in all headers. - Added @file comment to all headers. - Added parameter names to all function declarations in headers. - Corrected comment referencing where necessary. - Split some comments which documented blocks of declarations. - Converted notes about required work into @todo comments so doxygen can generate a todo list. Minor bug fixes.
fixed missing close comment in the two files i did by hand.
First pass at doxygenation -- mechanically putting in ** and where most likely needed **< using sed. Lots of cleanup needed to be really useful, including grouping data types and their member methods into class-like documentation.
moving things to base/generic
Setting up web subdirectory in repository
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