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Adding doxygen 'addtogroup' for Solver, Compiler, Integrator.
Fixed up some #includes in compiler .[ch] files. Switched instantiate.c to using 'asc_assert' instead of 'assert'. Added some missing GPL headers in C++ code. Silenced some slv3.c debug output. Switch void-return to int-return in slv9_presolve etc (slv9.c) Attemping to fix solvernotes.py for the commandline environment (browser==None) Removed redundant solve(SELF) in thermalequilibrium2.a4c. Some error reporting from addone_calc (extfntest.c). Expanded test size in extrelfor.a4c. Big rearrangement of bboxtest.c for top-down style. Fixed TestFreesteam.testintegrator, added end-value checks.
Merging Ben's changes from trunk, changeset 1105 to changeset 1234. This breaks Python test suite TestExtFn, so will need investigation.
Added finite-difference evaluation of gradients in blackboxes. Some work on J*v evaluation with IDA.
first attempt at merging with Ben's changes on the trunk
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