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recreating branch sreenatha from trunk r2629

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Fixed for missing libpython (DistutilsPlatformError). Fixed several env.Copy() warnings. Removed swig 'SideEffect' statement for current SCons swig tool.

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Removed references to MFGRAPH, seems better to use GraphViz directly. Added configuration test for GraphViz. Added configuration test for strdup, fixed mmio to not create its own strdup if other form is available already.

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Removed references to <malloc.h> (replaced by <stdlib.h>).

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Added integrator_write_matrix routine to allow integrator matrices to be written out. Modified integrator in PyGTK to output this matrix to a file in /tmp in the case where Integrator::solve fails. Fixed a bug in densematrix_write_mmio. The current implementation of integrator_write_matrix might not be quite right yet... needs some more thought.

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Added Matrix Market export routines (from math.nist.gov). Added necessary build commands for above. Work on Jacobi preconditioner for IDA (ongoing) Set integrator_analye to make a call to slv_block_partition. Not sure if that's a good idea or not. Tidied up comments in linsol.h Moved unnecessary #defines from model_reorder.h into model_reorder.c. Cleaned up codedocs in mtx*.h Added WITH_MMIO config.h flag.

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